rs234833980 SNP Detail

Summary

• ID
  rs234833980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGCCAG AAGATTAGAA
  CAGATTGCCT AAGTTAGTAT GAGACCAAGC AAAGGAATTC AGGAGAGACA GAGATAGAGA
  CAGGCAGAGA GAGAAACACA CACACAGAGA AAACAGATTG AAACAGTCAA AGCTCAGGAA
  AAAAAAAAAC CAACCTAGAA AGTGTGAGCT TATTCAGCAG CGAGTCTCAG AGGCTGAAAA
  Y
  ATTCTAGACC TAGATAAGAT TGTACAGAGG CTAGAAGCTT CCAGGACTAG CGTAGGTTAG
  CAGACAGAGG CAGCAAGCCT CGGAGACAAC GATCACCTCA GGTGAGTAGA AGTTACTTTT
  ATATCTTTCT CTTTGTCTCC TGAGCCCTGG TGTCACCGGC ATGTGCCCTT GGTTTTACGC
  AGGTGCTGAG CATCTAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250059	CHEV_4_107362242	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234833980					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546834 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm12899	predicted gene 12899	959 bp downstream
Rr376978	regulatory region 376978	826 bp downstream
Rr597042	regulatory region 597042	948 bp distal
Tssr38260	transcription start site region 38260	1144 bp downstream