rs234776196 SNP Detail

Summary

• ID
  rs234776196
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTCCCAT TACTCACTGA AGAGTGACTT CAGGATGCTA
  ATCCCTCCCC ACACCCTACC AACTTCCTCT TCTCAAGACT CCTCCCCATT ACCCCCCCCC
  M
  CCCCAGGAGA AAATGTTCAA AACTTTTCAC TTGAGATGAG TAACTGAGAA TGCTCGCTGG
  GCTTGGCTCT ACTATGTGCA CATTCATGCA TAAGCTGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
ss358835868	MGP_WTSI_3_90416167	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	C	A	A	C	C	C	A	C	C	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
rs234776196					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	C	A	A	C	C	C	A	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358835868	MGP_WTSI_3_90416167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	741 bp proximal
Gm57853	predicted gene, 57853	939 bp upstream
Rr580416	regulatory region 580416	within coordinates
Rr580417	regulatory region 580417	432 bp proximal
Rr580418	regulatory region 580418	543 bp proximal
S100a5	S100 calcium binding protein A5	465 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	637 bp upstream
Tssr30242	transcription start site region 30242	27 bp upstream
Tssr30243	transcription start site region 30243	587 bp upstream
Tssr30244	transcription start site region 30244	624 bp upstream
Tssr30245	transcription start site region 30245	655 bp upstream
Tssr30246	transcription start site region 30246	901 bp upstream
Tssr30247	transcription start site region 30247	931 bp upstream
Tssr30248	transcription start site region 30248	1037 bp upstream
Tssr30249	transcription start site region 30249	1274 bp upstream
Tssr30250	transcription start site region 30250	1483 bp upstream
Tssr30251	transcription start site region 30251	1530 bp upstream