rs234442822 SNP Detail

Summary

• ID
  rs234442822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138185851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGCCAT CCTGTTGGGT
  TGGGAGGCCG CCAGTCCTGT GGAGACTGAA GCTGGGAGAC TGGACTTGGG TTCAGGTTCT
  AGCTCTGACT GCCTTACTCT CGGAACTGGA ACTTCTGTAA ACATCACCTG CCTGATCTGC
  AGAGACCGAT GAACTCAGCT GCTGCCTCTT AGGGTCAAGA AGAGGAGTAT CAATCCTCGG
  Y
  ACACCAGAAC CTTCCACATT GGGCCGCCGC TAGCATCCAC TAAACATCCA ACCCGAGACC
  CAGTTATGGA CATACGTGTC TCTACCACTA GAGCCTACTG TTACATGCTT GAGGATGAGT
  CTGTTCTCTG GGGATGCATG GGGGGGGGGG GAAGTCCCAA AAGTTTCCAA GCACCTGCTG
  TACCTGCCTC TAATCACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363441136	MGP_WTSI_4_138014455	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234442822					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363441136	MGP_WTSI_4_138014455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138185851 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	166 bp downstream
Rr602932	regulatory region 602932	1751 bp distal
Rr602933	regulatory region 602933	1596 bp distal
Rr602934	regulatory region 602934	1289 bp proximal
Rr602935	regulatory region 602935	1365 bp proximal
Tssr39862	transcription start site region 39862	1819 bp downstream
Tssr39863	transcription start site region 39863	1721 bp downstream
Tssr39864	transcription start site region 39864	1655 bp downstream
Tssr39865	transcription start site region 39865	1480 bp downstream
Tssr39866	transcription start site region 39866	1160 bp downstream
Tssr39867	transcription start site region 39867	921 bp downstream
Tssr39868	transcription start site region 39868	851 bp downstream
Tssr39869	transcription start site region 39869	623 bp downstream
Tssr39870	transcription start site region 39870	594 bp downstream
Tssr39871	transcription start site region 39871	538 bp downstream
Tssr44166	transcription start site region 44166	1657 bp upstream
Tssr44167	transcription start site region 44167	1473 bp upstream
Tssr44168	transcription start site region 44168	1391 bp upstream
Tssr44169	transcription start site region 44169	1297 bp upstream
Tssr44170	transcription start site region 44170	1379 bp downstream