rs234031625 SNP Detail

Summary

• ID
  rs234031625
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCGGAGC TAGCGAAGGC
  GGATGTGACG TCAGATCGAC TACGTCGGAT GCACCTGCCA GGCCTGGGCT CCTGGGAGTG
  AGACACGGTT GCCCCAGGGG CTAAGGGACA GACTCGACCT GACCGAATCC CATCACAAGG
  ACGCCTTTCT AAACTCCACT GGGCCGCAGC TCTGGTCACG AGGCTCGGCC TCACTCCACC
  M
  CCCCCCCAAC CCCCGCCCCA TCCCTTGTCA GAGCTCCCGT GCATGCGCAG TCGCGCCGGA
  AGCACGGCTC TGGAGTTTCC GCATCACGGA CCTCAGGGAT CCTCTACGCT GTTCATTGTC
  CTTCGGGTCT CGCAACGTTT GCCTAATGAT TCCCAATTTC AGTGTTGCAT CATTCTAAAG
  CCTGATGTTG AAGACTATCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358910632	MGP_WTSI_3_95755168	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	C	A	A	A	A	A	C	C	C	A	A	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234031625					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	C	A	A	A	A	A	C	C	C	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358910632	MGP_WTSI_3_95755168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	within coordinates
Gm65572	predicted gene, 65572	83 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	within coordinates
Rr581096	regulatory region 581096	36 bp proximal
Rr581097	regulatory region 581097	94 bp proximal
Rr581098	regulatory region 581098	1853 bp proximal
Tssr30663	transcription start site region 30663	159 bp downstream
Tssr30664	transcription start site region 30664	62 bp upstream
Tssr34570	transcription start site region 34570	209 bp upstream