ATCCAAATTA ACGCAAAAAC CGTGATGCCG ACTAGAAAAC TTTTATGAGA GATCTTGGGA CTTCTTTTTG GGGGACTATT TTTGTACAGA GAAAACCTGA GGGCGGCGGG GAGGGCGGGG GAATCGGACC ATGTATAGAT CTGGAGGAAA AAAACTACGC AAAACTTTTT TTTAAAGTTC TAGTGGTACG TTAGGCGCTT Y GCAGGGAGTT CGCAAAAGTC TTTACCAGTA ATATTTAGAG CTAGACTCCG GGCGATGAAA AAAAAGTTTT AATATTTGCA AGCAACTTTT GTACAGTATT TATCGAGATA AACATGGCAA TCAAATGTCC ATTGTTTATA AGCTGAGAAT TTGCCAATAT TTTTCGAGGA AAGGGTTCTT GCTGGGTTTT GATTCTGCAG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss357517508 | MGP_WTSI_3_34550658 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs233965804 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss357517508 | MGP_WTSI_3_34550658 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr3:34705885 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13072 | CpG island 13072 | 207 bp distal | ||||||
Gm54566 | predicted gene, 54566 | 1442 bp upstream | ||||||
Gm64654 | predicted gene, 64654 | within coordinates | ||||||
Gm64662 | predicted gene, 64662 | 1871 bp upstream | ||||||
Gm64674 | predicted gene, 64674 | 1405 bp downstream | ||||||
Rr366704 | regulatory region 366704 | 1496 bp upstream | ||||||
Rr370604 | regulatory region 370604 | 1504 bp downstream | ||||||
Rr575166 | regulatory region 575166 | 1882 bp distal | ||||||
Rr575168 | regulatory region 575168 | 1321 bp distal | ||||||
Rr575169 | regulatory region 575169 | 715 bp proximal | ||||||
Rr575170 | regulatory region 575170 | 1183 bp proximal | ||||||
Sox2 | SRY (sex determining region Y)-box 2 | mRNA-UTR | ||||||
Sox2ot | SOX2 overlapping transcript (non-protein coding) | within coordinates | ||||||
Tssr28821 | transcription start site region 28821 | 1802 bp downstream | ||||||
Tssr28822 | transcription start site region 28822 | 1731 bp downstream | ||||||
Tssr28823 | transcription start site region 28823 | 1686 bp downstream | ||||||
Tssr28824 | transcription start site region 28824 | 1547 bp downstream | ||||||
Tssr28825 | transcription start site region 28825 | 1503 bp downstream | ||||||
Tssr28826 | transcription start site region 28826 | 956 bp downstream | ||||||
Tssr28827 | transcription start site region 28827 | 654 bp downstream | ||||||
Tssr28828 | transcription start site region 28828 | 1850 bp upstream | ||||||
Tssr32978 | transcription start site region 32978 | 1967 bp upstream | ||||||
Tssr32979 | transcription start site region 32979 | 1861 bp upstream | ||||||
Tssr32980 | transcription start site region 32980 | 1016 bp upstream | ||||||
Tssr32981 | transcription start site region 32981 | 689 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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