rs233962598 SNP Detail

Summary

• ID
  rs233962598
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117546439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATACAA TCTTGCCAAT
  TTAAAATACA TGAATAGATC AGAAGTAAAG ATATTAAGGA CTCACCCTAC CCTGAAAAGG
  GAAGTGGGAA AAGTGAACCC ATGGCAGCTC AGAATGGGTC AAGGAAAATG ATCGTGAAGA
  CCTTGGCAGG AAAGCCATGC AGAAGGGAGG AGGAGAGCAG AGGATGAGGA AAGCCCTCAA
  M
  GCAATCCCCC CCCACCCCCC GCCGGGACAG CCGACCATCC TGACTGAGGA GGCTGAGGAG
  GGGGCACAGA CAGGAACGAT GCCTGGATAG AGCGGCTGCC TCACACACTG AATGGAAAGG
  AAAGGTTGGC GAAAGGAAAG GGGTGTACAC CTGCAAAGTG AGGCGAGGAG GTGACTGACC
  TCCACACTTC GGAGATCGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321922582	CHEV_6_117519496	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233962598					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117546439 () rs orientation: forward

Symbol	Name	Function Class
Gm9946	predicted gene 9946	within coordinates
Rr637332	regulatory region 637332	186 bp proximal