rs233954542 SNP Detail

Summary

• ID
  rs233954542
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106590382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATGATAC ATTTACACGA TGGGATACTA CTCAGCTATT
  AAAAAAAAAA GACTTCATGA AATATGCAGG CAAATGGTTG GAACTAGAAA TGATCATCCT
  G
  AGTGAGGTAA CCCAGTCCCA AAAGAACACA CATGGTATGT GGTCACTGAT AAGTGGCTAT
  TAGGCAAAAA GCTTGAAATA CCCACAATAC AACTCACAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863830	CHEV_3_106485984	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233954542					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106590382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13667	CpG island 13667	1784 bp proximal
Gm56790	predicted gene, 56790	within coordinates
Lrif1	ligand dependent nuclear receptor interacting factor 1	1921 bp upstream
Rr582860	regulatory region 582860	1405 bp proximal
Rr582861	regulatory region 582861	1822 bp proximal
Tssr31131	transcription start site region 31131	1877 bp upstream
Tssr34985	transcription start site region 34985	1825 bp downstream