rs233847391 SNP Detail

Summary

• ID
  rs233847391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101352114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGATCAA GGGTGATTTA
  TAAGCCAGAT GTAACCATGG AAACATGAGG CTAATGGCTT GACCTTATTT GATAGACTGG
  ATTGAACTAT CTGAAATTCA GATGTGTGTG TATTCTTTAG TCCCTGCACT GAGGAGACAG
  AAGGATCTCT GTGAGCTCCA GGCCAGCCTG GTCTACATAG CCATAGGATA ACTGACAACA
  Y
  AGAGAGAACC TATCTCCAAA ACTTTTTTTT TTTAAATTGG TTTGTGTGTG CCATAGCATA
  CACATGGAAG CCATAGGACA ACTTTTGGGA ACTGTTTTTC TCTCTGCTTT GTTGAGACAG
  GGTTTTTCTG TCTCTGCCTC TCTTTGTACT GTAGGCTAGC TGGGCTGTGA ACTTCAAGCT
  GATCTCTTTG TTTTTGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321230241	CHEV_4_101167522	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233847391					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101352114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14501	CpG island 14501	1218 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	1714 bp upstream
Rr596165	regulatory region 596165	1022 bp distal
Rr596166	regulatory region 596166	1241 bp proximal
Rr596167	regulatory region 596167	1742 bp proximal
Tssr37995	transcription start site region 37995	1628 bp upstream
Tssr37996	transcription start site region 37996	1759 bp upstream