rs233825508 SNP Detail

Summary

• ID
  rs233825508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108354506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTAGA GGACCAAGGT
  TCAATTCCCA GCACCCAGGT GGCAGCTCAC AACTCTGTGT TACTCCAGTT CCGGTGGATC
  TGGCACCCTC AAACAGACGT GCATGCAGAC AAACCCCACC AGTGCATATG AAATAAAAAT
  AAATTATTTA CTGGGCAGTG ATGGCTTACT AATTTAATCC CAGTACTGGG GAGGCAGAGA
  Y
  AGGCAGATCT CTATGAGTTT GAGGCCAACC TGGTCTACAG AGCAAGTTCG AAGTCAGCCA
  AGGTTACACA GAGAAACCCT GTCTTGAAAA ACCAAAAGTT AAGGATCTGG AGAGGTGGCT
  CAGAGGTTAA GTCTTGCGCG CCAGACTCGA CCAGCAAGAA CAACGCTGCA ACAGGATCCT
  TCTGCACACG TTTATTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320866595	CHEV_3_108250108	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233825508					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108354506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13702	CpG island 13702	1812 bp distal
Gm56809	predicted gene, 56809	1140 bp downstream
Rr397936	regulatory region 397936	1794 bp downstream
Rr583238	regulatory region 583238	1502 bp distal
Rr583239	regulatory region 583239	1935 bp distal
Rr583240	regulatory region 583240	1796 bp distal
Sars1	seryl-tRNA synthetase 1	1981 bp upstream
Tssr35147	transcription start site region 35147	1979 bp upstream