rs233712221 SNP Detail

Summary

• ID
  rs233712221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCTTGA TCCCTCATTT
  CTCCCTCCTT CCCTCCCTCT TCTTGCTGTG TGTGTGTGTG TGGGGGGGGA GCCTCACGTC
  ATAGTCCTCA AAATGCTCTG CCTCCATCAC AGAACCCGGG AAAGTCCACC CAGGCTGAAA
  AGGGCATTTA TTTTTAATTC ATGAAAAGGG AACACGAACA CACCTTTTCC TGAGGACAGG
  Y
  AATGACATCT CTGCTCAGAA GTTTCAAGCA TTCCTTTCTG GTTAGAGCCT GGGTGGCTTT
  AAGGGGCATT TAGAGAACCA GAAACTGCCC AGATCTGTTA CAGAGTGCCA GCTGCTGTGA
  CCATGTGAAT TTCACTCTCT GAGTATGGGC AAGTGTGAAT GGAGGGTGGG TTAAGCAGCT
  GAGAGGAGGA AGGTTTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321416340	CHEV_4_147376433	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233712221					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086781 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1935 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	250 bp downstream
Rr407043	regulatory region 407043	764 bp distal
Rr604546	regulatory region 604546	1592 bp distal
Rr604547	regulatory region 604547	603 bp distal
Tssr40239	transcription start site region 40239	1683 bp downstream
Tssr40240	transcription start site region 40240	1570 bp downstream
Tssr40241	transcription start site region 40241	1213 bp downstream
Tssr40242	transcription start site region 40242	986 bp downstream
Tssr40243	transcription start site region 40243	520 bp downstream
Tssr40244	transcription start site region 40244	317 bp downstream
Tssr44568	transcription start site region 44568	249 bp upstream