rs233669306 SNP Detail

Summary

• ID
  rs233669306
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155688296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagcctggg ttactctttt ttttttggtt
  tttcaagaca gggtttctct gtgtagccct ggttgtcctg gagctcactt tgtagaccag
  gctggcctcg aactcagaaa tccgcctgcc tctgcctccc gagtgctggg attaaaggcg
  W
  gcgccaccac gcccagctct gggttactct ttaagatcct gtctcaaaaa aGGGGAGTGG
  AGGTCTCACC AGCATTTGGG TGAGACAAGC AGCTGTTGGT TTGGTAGCTT TGATGTCATG
  TCTTTGCTGT GGGTCTAGGG CAGAGTGTGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442500	CHEV_4_154977948	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233669306					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155688296 () rs orientation: forward

Symbol	Name	Function Class
B930046K06Rik	RIKEN cDNA B930046K06 gene	1983 bp upstream
Rr606515	regulatory region 606515	1994 bp distal
Rr606517	regulatory region 606517	1885 bp distal
Rr606518	regulatory region 606518	1395 bp distal
Rr606519	regulatory region 606519	711 bp distal
Rr606520	regulatory region 606520	within coordinates
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40684	transcription start site region 40684	1899 bp downstream
Tssr44955	transcription start site region 44955	1998 bp upstream