rs233626471 SNP Detail

Summary

• ID
  rs233626471
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106695527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCCTAAT CGAGGAGCAA AAGAGCACAA GAGAGGGCGT
  GGCCGACGAA AGAGGAGGAG CCTAGCTGTG TCACCTAAGG GTGTTGGGGG AGCGGGGGGG
  S
  GGGGGGGATG CTGGATACCT TCTTTATAAC CCCATGTCCC CCTCCCATTT TACAGATGTG
  GACACTGAGA ACTAGAGCCC AGCGTTTTGC AATAAATTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321247401	CHEV_4_106510935	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233626471					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106695527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14533	CpG island 14533	78 bp distal
Cpgi14534	CpG island 14534	504 bp proximal
Gm31125	predicted gene, 31125	948 bp downstream
Gm57074	predicted gene, 57074	within coordinates
Gm69615	predicted gene, 69615	109 bp upstream
Rr376971	regulatory region 376971	111 bp upstream
Rr596834	regulatory region 596834	1062 bp distal
Rr596835	regulatory region 596835	756 bp distal
Rr596836	regulatory region 596836	120 bp distal
Rr596837	regulatory region 596837	153 bp distal
Rr596838	regulatory region 596838	within coordinates
Rr596839	regulatory region 596839	717 bp proximal
Rr596840	regulatory region 596840	1382 bp proximal
Rr596841	regulatory region 596841	1766 bp proximal
Rr596842	regulatory region 596842	1918 bp proximal
Tssr38190	transcription start site region 38190	1425 bp downstream
Tssr38191	transcription start site region 38191	1877 bp upstream
Tssr42648	transcription start site region 42648	1691 bp downstream