rs233551646 SNP Detail

Summary

• ID
  rs233551646
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138922168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT GGTGGAGTGG CCAGATGGGA
  T
  TTAGTCTCCA CAGAATCATC TAGGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321380216	CHEV_4_138750772	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233551646					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138922168 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			1207 bp upstream
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			855 bp distal
Rr377279	regulatory region 377279			211 bp downstream
Rr377280	regulatory region 377280			1998 bp upstream
Rr603134	regulatory region 603134			1923 bp distal
Rr603135	regulatory region 603135			1761 bp distal
Rr603136	regulatory region 603136			851 bp distal
Tssr39900	transcription start site region 39900			1916 bp downstream
Tssr39901	transcription start site region 39901			1897 bp downstream
Tssr39902	transcription start site region 39902			1863 bp downstream
Tssr39903	transcription start site region 39903			1605 bp downstream
Tssr39904	transcription start site region 39904			1571 bp downstream
Tssr39905	transcription start site region 39905			1527 bp downstream
Tssr39906	transcription start site region 39906			724 bp downstream
Tssr44218	transcription start site region 44218			857 bp upstream