rs233345534 SNP Detail

Summary

• ID
  rs233345534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89300932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCCCCC AGGCACCCCC
  TCCCTCCGCC CAATAAGGAC ATAAACTTCC ACCTCTTCCA ACAGCTAGTT CCAGCAGGGA
  GCATATGGGT CCCTCCCTCC TTTTCGTCCC TTTTCTCCGA GATTTTGCTT CGCTCCCTGA
  GCCTTTCCCA CCCTTTTCCT TTCCCTTCTT TCCTTCAAAC TCCCTTCACC TGCCGCGATC
  Y
  CTCTCCCTCT CTGCTTTCTA CCACTATCTC CTCCGGTCCA CCTTAACTGG AGCTCCGCCT
  CCGACCCCCG TCCAGCCCTC TGCTGCTGCC CAGCTCCACC CCTTGCACGC CACCGCCCTG
  CCCATCCATT GGCCTGAACA CCCGCCTATC CCATGTGGGA CGCGCCTAGG GTTCATCCAG
  GGAGGGGGTG GAGCCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811620	MGP_WTSI_3_89197547	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233345534					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811620	MGP_WTSI_3_89197547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89300932 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13427	CpG island 13427			1082 bp distal
Cpgi13428	CpG island 13428			372 bp distal
Cpgi13429	CpG island 13429			47 bp proximal
Gm15417	predicted gene 15417			within coordinates
Rr375331	regulatory region 375331			874 bp downstream
Rr397788	regulatory region 397788			within coordinates
Rr580069	regulatory region 580069			1785 bp distal
Rr580070	regulatory region 580070			1567 bp distal
Rr580071	regulatory region 580071			1455 bp distal
Rr580072	regulatory region 580072			274 bp distal
Rr580073	regulatory region 580073			within coordinates
Rr580074	regulatory region 580074			1076 bp proximal
Rr580075	regulatory region 580075			1596 bp proximal
Tssr30097	transcription start site region 30097			1755 bp downstream
Tssr30098	transcription start site region 30098			1417 bp downstream
Tssr30099	transcription start site region 30099			1374 bp downstream
Tssr30100	transcription start site region 30100			234 bp upstream
Tssr30101	transcription start site region 30101			643 bp upstream
Tssr34133	transcription start site region 34133			433 bp upstream
Tssr34134	transcription start site region 34134			289 bp upstream
Tssr34135	transcription start site region 34135			4 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant