rs233240698 SNP Detail

Summary

• ID
  rs233240698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7438020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTCAA CAGCACATTC
  AGCTGACCTC AAGAGGAGAA TGTCCCTACC ACTCTTAACA GAGATTAAGA AATGCTGCCC
  ACCAGACCTT TTACAGCTAC AATTATGCCT CAGTTACCTT CCCTACGGGT ACTGCATCCA
  ATTCAACCAC ACAATGGGAA AGCCATTCCT CTCTGACCAA TGAGGAAACT GAGACAAGAG
  Y
  ACACAACAAA GCTGAGTTTG GGAAAGGATA CATGGACTGT AGTGAGCATC TAAGCTTCGA
  TGCTAATTAC CAGCACTATG GCACTACTTG GAACTAGGCT CGATCCTGAG TGCTTCTGCT
  CATCCCGTGA GGTCTGTGCC ATAACTTCCT GTTTTACAGA TGAGGGTGTT TATCTACGGC
  ACGATGCAGC TAAGAATTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888029	CHEV_X_7148907	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs233240698					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7438020 () rs orientation: forward

Symbol	Name	Function Class
Flicr	Foxp3 regulating long intergenic noncoding RNA	1819 bp upstream
Gm36995	predicted gene, 36995	within coordinates
Ppp1r3f	protein phosphatase 1, regulatory subunit 3F	Intron
Rr122	regulatory region 122	507 bp distal
Rr689613	regulatory region 689613	586 bp distal
Rr689614	regulatory region 689614	1329 bp proximal
Tssr160371	transcription start site region 160371	590 bp downstream
Tssr160372	transcription start site region 160372	578 bp downstream
Tssr160373	transcription start site region 160373	758 bp upstream
Tssr160374	transcription start site region 160374	831 bp upstream
Tssr160375	transcription start site region 160375	858 bp upstream
Tssr160376	transcription start site region 160376	885 bp upstream
Tssr160377	transcription start site region 160377	892 bp upstream
Tssr160378	transcription start site region 160378	918 bp upstream
Tssr160379	transcription start site region 160379	956 bp upstream
Tssr160380	transcription start site region 160380	1015 bp upstream
Tssr160381	transcription start site region 160381	1424 bp upstream
Tssr162794	transcription start site region 162794	928 bp upstream
Tssr162795	transcription start site region 162795	540 bp downstream
Tssr162796	transcription start site region 162796	1067 bp downstream