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rs233196468 SNP Detail
Summary
  • ID
    rs233196468
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:41522663 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGTGCTAGG CCCACATCTA
    CACTCCCAAC ACTGGGAAGA CTTAAACAAG AGCAGTGCCA GGAGTGTGAG GCCAACCGGA
    GCTACACAAA GAGTTCTAAG CCAGTGTGGA ATATAGAGAA ATTTAGGCCA TTATGGATTG
    CAGATTAAGA TCCTGTCCAC CCCACCCCCT AAAAATCCAA AGAAAGAAAA GAAAACTATA
    R
    AGACTCCTAC CAAAAAGAAT CAGAATTCCA GCATGATGGC CGAAGAGTTT GAAGCCAAGC
    ACTAAGCTTG TGATCTTGTA TAAGGTCTGT GCAGGTTCTT TTACCGTTGT TTCAAGACCA
    GAAGTAAAGC GATATCCACA GAAATAGGAG AAAGGATCAA AATAAAGTTT CTCCATTATC
    CAGAAGGCCG TGGGTTGCTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368070468 MGP_WTSI_6_41495728 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233196468 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss368070468 MGP_WTSI_6_41495728 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:41522663 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm68244 predicted gene, 68244 1439 bp upstream
Gm68268 predicted gene, 68268 370 bp upstream
Rr629250 regulatory region 629250 1685 bp distal
Rr629251 regulatory region 629251 949 bp distal
Tcrb T cell receptor beta chain within coordinates
Trbc2 T cell receptor beta, constant 2 1001 bp upstream
Trbj2-7 T cell receptor beta joining 2-7 1873 bp downstream
Tssr1821 transcription start site region 1821 839 bp downstream
Tssr1822 transcription start site region 1822 1791 bp upstream
Tssr55943 transcription start site region 55943 1902 bp downstream
Tssr55944 transcription start site region 55944 1700 bp downstream
Tssr55945 transcription start site region 55945 1209 bp downstream
Tssr55946 transcription start site region 55946 896 bp downstream
Tssr55947 transcription start site region 55947 712 bp downstream
Tssr55948 transcription start site region 55948 348 bp upstream
Tssr55949 transcription start site region 55949 534 bp upstream
Tssr55950 transcription start site region 55950 841 bp upstream
Tssr55951 transcription start site region 55951 1568 bp upstream
Tssr55952 transcription start site region 55952 1615 bp upstream
Tssr55953 transcription start site region 55953 1651 bp upstream
Tssr55954 transcription start site region 55954 1699 bp upstream
Tssr55955 transcription start site region 55955 1724 bp upstream
Tssr55956 transcription start site region 55956 1765 bp upstream
Tssr60576 transcription start site region 60576 1450 bp upstream
Tssr60577 transcription start site region 60577 1360 bp upstream
Tssr60578 transcription start site region 60578 1339 bp upstream
Tssr60579 transcription start site region 60579 872 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory