rs233196468 SNP Detail

Summary

• ID
  rs233196468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41522663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCTAGG CCCACATCTA
  CACTCCCAAC ACTGGGAAGA CTTAAACAAG AGCAGTGCCA GGAGTGTGAG GCCAACCGGA
  GCTACACAAA GAGTTCTAAG CCAGTGTGGA ATATAGAGAA ATTTAGGCCA TTATGGATTG
  CAGATTAAGA TCCTGTCCAC CCCACCCCCT AAAAATCCAA AGAAAGAAAA GAAAACTATA
  R
  AGACTCCTAC CAAAAAGAAT CAGAATTCCA GCATGATGGC CGAAGAGTTT GAAGCCAAGC
  ACTAAGCTTG TGATCTTGTA TAAGGTCTGT GCAGGTTCTT TTACCGTTGT TTCAAGACCA
  GAAGTAAAGC GATATCCACA GAAATAGGAG AAAGGATCAA AATAAAGTTT CTCCATTATC
  CAGAAGGCCG TGGGTTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368070468	MGP_WTSI_6_41495728	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs233196468					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368070468	MGP_WTSI_6_41495728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41522663 () rs orientation: forward

Symbol	Name	Function Class
Gm68244	predicted gene, 68244	1439 bp upstream
Gm68268	predicted gene, 68268	370 bp upstream
Rr629250	regulatory region 629250	1685 bp distal
Rr629251	regulatory region 629251	949 bp distal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	1001 bp upstream
Trbj2-7	T cell receptor beta joining 2-7	1873 bp downstream
Tssr1821	transcription start site region 1821	839 bp downstream
Tssr1822	transcription start site region 1822	1791 bp upstream
Tssr55943	transcription start site region 55943	1902 bp downstream
Tssr55944	transcription start site region 55944	1700 bp downstream
Tssr55945	transcription start site region 55945	1209 bp downstream
Tssr55946	transcription start site region 55946	896 bp downstream
Tssr55947	transcription start site region 55947	712 bp downstream
Tssr55948	transcription start site region 55948	348 bp upstream
Tssr55949	transcription start site region 55949	534 bp upstream
Tssr55950	transcription start site region 55950	841 bp upstream
Tssr55951	transcription start site region 55951	1568 bp upstream
Tssr55952	transcription start site region 55952	1615 bp upstream
Tssr55953	transcription start site region 55953	1651 bp upstream
Tssr55954	transcription start site region 55954	1699 bp upstream
Tssr55955	transcription start site region 55955	1724 bp upstream
Tssr55956	transcription start site region 55956	1765 bp upstream
Tssr60576	transcription start site region 60576	1450 bp upstream
Tssr60577	transcription start site region 60577	1360 bp upstream
Tssr60578	transcription start site region 60578	1339 bp upstream
Tssr60579	transcription start site region 60579	872 bp upstream