rs232516393 SNP Detail

Summary

• ID
  rs232516393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53370373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCGGGT GAGTTTATGT
  GCACCATGTG CCCACAAAGG CCAGAAGAGG GCATCAGGCT CCCTGGAACT GGAGTTACAG
  TGAGAGAGTG AGCCTTCAAG TTGGTGCTGG GAATCGAACC TGAGTCCTCT GAAAAAGCTG
  CTCGAGCTCC CAACCTCCGC GCCACCTCCC CAGCCCCACG TGCATTCTTT TTACACTAAA
  W
  GAGAGGACGA GTCGTCAGCT GCTGAGCCCC AGGGGAGCAG GTTTGGGACC CCAGGGGCTG
  TACCCCTCGG TGGCACCCAC ACCCACAGCC TTCTGCCTGC TATTTACCAG CGAGCCACAG
  AAGCGCGAAT GCAAAACCAG ACAGGAAAGG AAGAAGGCGG CGCCCGCCAG GCAGACCCAG
  GCTCTCGCCA TCGCGAGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320768450	CHEV_3_53266874	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232516393					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53370373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	13 bp proximal
Nhlrc3	NHL repeat containing 3	Intron
Proser1	proline and serine rich 1	843 bp upstream
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	143 bp distal
Rr576697	regulatory region 576697	370 bp proximal
Rr576698	regulatory region 576698	639 bp proximal
Rr576699	regulatory region 576699	725 bp proximal
Tssr29113	transcription start site region 29113	622 bp upstream
Tssr29114	transcription start site region 29114	714 bp upstream
Tssr29115	transcription start site region 29115	742 bp upstream
Tssr29116	transcription start site region 29116	827 bp upstream
Tssr29117	transcription start site region 29117	943 bp upstream
Tssr33269	transcription start site region 33269	248 bp downstream
Tssr33270	transcription start site region 33270	282 bp downstream