About   Help   FAQ
rs232405935 SNP Detail
Summary
  • ID
    rs232405935
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:24255769 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTTTGTTT GGGGTTTTTC
    CCCCTCCTTA TAAGTGGTTT ATCTCAGGTA CTCTGTCATA GAGTGAAAGA TGACTAATGC
    AGAGTATGTG TTGCAGAGTA TGTGTTGCAG ATCATGTGTT ACTAGAACAT GAAGTAGTAT
    GTTATAGGAG AGAATCCCAG TGGTAGGATG TATTCGCCTT TGGGCTATTG GAAACCTGGG
    R
    CAGGCACAGT TGAAATTGAA GAGCATCATC ATGGGAACAC ATTTACTTAG ATTCCATGCA
    GTGCTTTGCT GAGTAGCTAT CTGGCTAGAA TCCCATGTCT CTTTGCCCAG TGTCCTTTCC
    CCTCACTGGT TTTTGATCAT ATTGATTACA GTTTTGACTT TTACTTCCTT AATCCTTAAA
    TTCAACAGCT TTGTTGCCTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353384491 MGP_WTSI_2_24221277 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232405935 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353384491 MGP_WTSI_2_24221277 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:24255769 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11279 CpG island 11279 1624 bp proximal
Psd4 pleckstrin and Sec7 domain containing 4 1802 bp upstream
Rr552857 regulatory region 552857 1706 bp distal
Rr552858 regulatory region 552858 568 bp proximal
Rr552859 regulatory region 552859 1363 bp proximal
Rr552860 regulatory region 552860 1864 bp proximal
Tssr16617 transcription start site region 16617 1808 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory