rs232312461 SNP Detail

Summary

• ID
  rs232312461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105723651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTAAAC AATATTAATT
  TTCACAGCAT TGTGAAGTTG GTGACGTCGC TCAAGCATGA TGACAGCTGG TCAGTAGGTC
  ACAAGTTCTC CTCGTTGTTA TTCCCACAGA CTGGGAAGCC AAGGCGGAGA AGGACATGTG
  AGACTGGGCA GGCTTCAGCT GTCATCTGTG GGAAGTGGCT TTTGGTTGAC CAGCGGTACT
  Y
  CCCAGTGTCA GCACGTGTGT TGTGTCGGCA GCTCAGACCT TGCGCTGAGG GGCCCCTGTC
  CTCAGCCACC CTTCATCTTG GGAAAACTCT CTGGTGTAGA GCAGGGAGGT AGGGAGGCAG
  GGAGGCAGGG AGGCAGGGAG GCAGGGAGGC AGGGAGGCTT CCTAGTGCTA ACTCAACTTG
  TTTAAACCAT TATACTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863297	CHEV_3_105619253	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232312461					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105723651 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	within coordinates
Rr582787	regulatory region 582787	746 bp distal
Rr582788	regulatory region 582788	465 bp distal
Rr582789	regulatory region 582789	within coordinates
Rr582790	regulatory region 582790	1814 bp proximal
Tssr31084	transcription start site region 31084	780 bp downstream