rs232060950 SNP Detail

Summary

• ID
  rs232060950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5286820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGATTGGGA CGCGACAGTG ACATGGGCAT
  CGATCGCTTC CATTGAGAGC AAAGCAAAAA CACAGCCCGG GTATGTAACA CTTGCTGCCA
  TCCACACTTG CTTTACCTTG TGTTTACTGA CAAAACTGAC GGAGCAAGCT CAGACTTctt
  Y
  cttccttcct tccttccttc ctttcttcct ttcttccttt cttcctttct tTCGCTTTTT
  GCTATTTTCT CTTTTCTAAA TGAAGAATAA AAAGAATAAT GTGTATAACA TTTGTTGAAA
  AGGATGGGTT TTAATAACGC ATAAAGGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320637702	CHEV_3_5221760	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232060950					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5286820 () rs orientation: forward

Symbol	Name	Function Class
2700069I18Rik	RIKEN cDNA 2700069I18 gene	937 bp upstream
Rr406719	regulatory region 406719	1774 bp proximal
Rr573173	regulatory region 573173	843 bp distal
Rr573174	regulatory region 573174	441 bp distal
Rr573175	regulatory region 573175	within coordinates
Tssr28274	transcription start site region 28274	691 bp downstream
Tssr28275	transcription start site region 28275	557 bp downstream
Tssr28276	transcription start site region 28276	515 bp downstream
Tssr32523	transcription start site region 32523	965 bp upstream
Zfhx4	zinc finger homeodomain 4	Intron