rs232054598 SNP Detail

Summary

• ID
  rs232054598
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62246610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GAACTCTTTC CAAGGGTCCT
  S
  CGGTGGCGGC GAGCTCTCTA GGTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320789363	CHEV_3_62143111	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232054598					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62246610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9330121J05Rik	RIKEN cDNA 9330121J05 gene			within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26			mRNA-UTR
				Noncoding-Transcript-Variant
Rr577511	regulatory region 577511			1333 bp proximal
Tssr29350	transcription start site region 29350			177 bp downstream
Tssr29351	transcription start site region 29351			152 bp downstream
Tssr29352	transcription start site region 29352			384 bp upstream
Tssr29353	transcription start site region 29353			857 bp upstream