rs232054511 SNP Detail

Summary

• ID
  rs232054511
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109262666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAACTTTG AGCTCCTGCA
  CCTTCTGCCT CTACCTCCCA CGTGTTACAA GTGTGTAGTG TTGTGAAGGA CTGTTTTTTC
  TTTTGAAGAG AGACCTTTCA GTGATAAGCT GTTGGCTCCA TCCCTGGTTC CATGGATGAA
  TTATGTGACC AGGAAGGAGT GTGTGTCCTA GGCAAAAGAA ACAGCATGTA CAAATGCCCG
  G
  GGACATGACT GTGTGGGGCG TGCGACAGGC TTCAGCCTCA TCACCTAGGA CTCACTCGTC
  TCTACACTGT TCTCTTCAGA ACCACAGACC CCAGCATTCA TCAGTGTGCC CTTACCCACT
  CCTGTGCCTT TGTCTATATT GGTCCCTCAT GGAGCACACC TGCTCCCAGC TTCATTAACG
  CACTTCTCAA GGCTCAGCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254085	CHEV_4_109078074	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232054511					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109262666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597311	regulatory region 597311			within coordinates
Rr597312	regulatory region 597312			365 bp distal
Rr597313	regulatory region 597313			754 bp proximal
Rr597314	regulatory region 597314			1652 bp proximal
Tssr38345	transcription start site region 38345			1278 bp upstream
Tssr38346	transcription start site region 38346			1625 bp upstream
Tssr38347	transcription start site region 38347			1652 bp upstream
Tssr42761	transcription start site region 42761			776 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			within coordinates