rs231936025 SNP Detail

Summary

• ID
  rs231936025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42563987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTATAAA GACATATATA
  CATATATATT TGTGTATACG AATCCATATC AGCCACTGCC TTCTTGGGAG TTCAGCCTGT
  TGTATAAATC CTTTAACTTC CAGTAACATA ATAGCTTGAG ACAGGACCTG CCTGTGATAG
  TTCATAAGTG GTAGTTTTGC TCTTGCACAA AGGTTAACCT GAGCTAAGCA AGCGAGTTCT
  Y
  GATCACAATA TTACTCATAT TGACAAAGTA TTTGTTGATC ACCTACTCTA TTTAAACCAC
  TCAGACAGGT GATATTTGCA CATTAATTTT AGGAATAGCA AAACAATATA TGTGGAGCCA
  ATCGAAGATA GTTCTTCATT TAAGACCCTG GATTTGGGGA GCTTTTGTAA ACAAACAGAA
  CATGAAAGAT GCTAAACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368091192	MGP_WTSI_6_42537052	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231936025					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368091192	MGP_WTSI_6_42537052	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42563987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1827 bp downstream
Tssr56047	transcription start site region 56047			1678 bp downstream
Tssr56048	transcription start site region 56048			1082 bp downstream
Tssr56049	transcription start site region 56049			1008 bp downstream
Tssr60620	transcription start site region 60620			1300 bp upstream
Tssr60621	transcription start site region 60621			1280 bp upstream
Tssr60622	transcription start site region 60622			1221 bp upstream
Tssr60623	transcription start site region 60623			1172 bp upstream
Tssr60624	transcription start site region 60624			1145 bp upstream
Tssr60625	transcription start site region 60625			1072 bp upstream
Tssr60626	transcription start site region 60626			1056 bp upstream
Tssr60627	transcription start site region 60627			1047 bp upstream
Tssr60628	transcription start site region 60628			881 bp upstream
Tssr60629	transcription start site region 60629			841 bp upstream
Tssr60630	transcription start site region 60630			773 bp upstream
Tssr60631	transcription start site region 60631			731 bp upstream
Tssr60632	transcription start site region 60632			685 bp upstream
Tssr60633	transcription start site region 60633			655 bp upstream
Tssr60634	transcription start site region 60634			646 bp upstream
Tssr60635	transcription start site region 60635			574 bp upstream
Tssr60636	transcription start site region 60636			475 bp upstream
Tssr60637	transcription start site region 60637			211 bp upstream
Tssr60638	transcription start site region 60638			168 bp upstream
Tssr60639	transcription start site region 60639			116 bp upstream
Tssr60640	transcription start site region 60640			124 bp downstream