rs231909396 SNP Detail

Summary

• ID
  rs231909396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138612084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGATACC AAAACCATCT
  TAATGTTCCC CTAGCCTTTA ATTTTATTAT TTTATTTTAT TTTTGAGAGA CTTGCCATAG
  CAGCAGAATC TATTACAGTG TGGCTTTTAA GACATTCTTG GTTTTCGGAA TTAATTGGTT
  CCCTCTGGAG GCCTGCAGCT TCCTTTGTCC CAAGGTTGAG CCATCCCCTC CCAGTTAGAC
  Y
  GAGCTAGACA CCCTGGTCCT TCATCTCCAC TTCTAGAAAC AAGGGCTAAA GTAAATGTAC
  TTTAAAAGTC AGAGAGCGGG TGGAGACATA GTTTTACAAG GTATGCATGA GTTCCACAAA
  GAACCAGTGT CCAGCAAAAC AAACGACCCA TGTGGTCCTC ACCTCCAAGA ACTTCTGGGC
  CGATTAGGAC AGGAAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ
ss359923076	MGP_WTSI_3_138569287	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ
rs231909396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359923076	MGP_WTSI_3_138569287	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138612084 () rs orientation: forward

Symbol	Name	Function Class
Rr586228	regulatory region 586228	224 bp distal
Rr586229	regulatory region 586229	within coordinates
Rr586230	regulatory region 586230	45 bp distal
Rr586231	regulatory region 586231	205 bp proximal
Rr586232	regulatory region 586232	671 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR