rs231857239 SNP Detail

Summary

• ID
  rs231857239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144598396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTGCTG TCTCCAGAGT
  GCAGCGATTA AAGGAGTACA TTGCTTTTTG TTTGTTTGTT TGTTTCAATT TTTCATTTAA
  TTATTAGATA TTTTCTTCAT TTACATTTCA AATGCTATCC CAAAAGTCCC CTATTCCCTT
  CCCCTGCCCT GCTCCCCAAC CCACTCCCAC TTCCTTGGCC CTGGCATTCT CCTGTACTGG
  S
  GCATATGATT TTTGCAATAC CAAAGACCTC TCCTCCCATT GATGGCTGAC TAGGCCATCC
  TCTGCTACAT GTGCAACTAG AGAGACAGTT CTGGGTGGTA CTGGTTAGAT CATATTGTTG
  ATACTCCTAA AGGATTGCCA ACCCCTTTAG CTCCTTGGGT ACTTTCTCTA GCTCCTTCTT
  TAGGGGCCCT GTGTTCCATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ
ss363589648	MGP_WTSI_4_144461729	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SPRET/EiJ
rs231857239					SNP	G	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363589648	MGP_WTSI_4_144461729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144598396 () rs orientation: forward

Symbol	Name	Function Class
Gm57096	predicted gene, 57096	within coordinates
Rr604241	regulatory region 604241	991 bp proximal
Rr604242	regulatory region 604242	1307 bp proximal