rs231659662 SNP Detail

Summary

• ID
  rs231659662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34702580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAACAGC CAAGCCTGGG
  AGAATGGGGA TTGGAGATGT GGGGGTGGGG AAGAGGCGTT GGTGGGCAGA GAGGGAAGGA
  TAAACAGGGC AGTTTGTAAG GACAATGAGC GGAGCGTGGC CGGCAGATAC CCTTGTGAAC
  GTTTTCTTTA GGCAGAGTTG GGGTAGATGA GGGGAGGAGG GGCCGCGAGA GTATTGCAGG
  R
  AAAAAAAAGA AAGAAAGAAA GAAAATAAGT AACCCTGATG GTTTAAGCTC TTTATTTAAA
  AAAAAAAAAA AAATGGCATC AGGACTTTCT TCCTTCTCTC CCCTCTTTTG TACCCAAGTG
  CATTTTAGCC ACAAAGGTTC CAACAAGAGA GTGGAAGGAA ACTTAGACGG GGCTTTGTTT
  GACTCCGTGT AGCGACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357517477	MGP_WTSI_3_34547353	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231659662					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357517477	MGP_WTSI_3_34547353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34702580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	288 bp proximal
Gm64654	predicted gene, 64654	1568 bp downstream
Gm64662	predicted gene, 64662	within coordinates
Gm64674	predicted gene, 64674	1562 bp upstream
Rr550	regulatory region 550	1863 bp distal
Rr370604	regulatory region 370604	within coordinates
Rr575165	regulatory region 575165	1454 bp distal
Rr575166	regulatory region 575166	within coordinates
Rr575167	regulatory region 575167	527 bp distal
Rr575168	regulatory region 575168	1424 bp proximal
Sox2	SRY (sex determining region Y)-box 2	1974 bp upstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28821	transcription start site region 28821	1492 bp upstream
Tssr28822	transcription start site region 28822	1556 bp upstream
Tssr28823	transcription start site region 28823	1593 bp upstream
Tssr28824	transcription start site region 28824	1743 bp upstream
Tssr28825	transcription start site region 28825	1791 bp upstream
Tssr32975	transcription start site region 32975	54 bp downstream
Tssr32976	transcription start site region 32976	521 bp downstream
Tssr32977	transcription start site region 32977	1293 bp downstream
Tssr32978	transcription start site region 32978	1325 bp downstream
Tssr32979	transcription start site region 32979	1416 bp downstream