rs230958409 SNP Detail

Summary

• ID
  rs230958409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108804444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGTGGCT GACAGCTGAC
  CAGAGTGCAA GCTACATTTC AGCTAAAATT TGCACAGAAG TAGCTTATGG AGGAAACAAA
  GCATAGCTTT AATGTCCATT TTCAGTTTGT GTTAGCTTCA GGGAGGCAGA AACTAGTAGT
  TCCGTGTCAA GGACTGGAAT CAGTTGGTCT TATACAAGTT TATCCAGTCC AGTAACTTCT
  Y
  CCCCCTCCCC CCTTTTTTTT TGTATACTGC TCAGGCCTTT GTATCTCACA AAATAAGCTC
  TCCCAACCCA AAGAACTTAA ATTGTTGCTG GCTGCTCTGT TGTACCCTAT CACATTGCAG
  GGACAATTCT GACCCCAAAA TGGAAGGAGA ATGGTCCAGG ATTTACCTAA GTCCTCCCTG
  TCATTGCCTT CAGGTTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369596519	MGP_WTSI_6_108777477	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230958409					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369596519	MGP_WTSI_6_108777477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108804444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	749 bp proximal
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399822	regulatory region 399822	within coordinates
Rr399823	regulatory region 399823	853 bp upstream
Rr636211	regulatory region 636211	1916 bp distal
Rr636212	regulatory region 636212	572 bp distal
Rr636213	regulatory region 636213	within coordinates
Rr636214	regulatory region 636214	861 bp proximal
Rr636215	regulatory region 636215	1666 bp proximal
Tssr58099	transcription start site region 58099	1025 bp upstream
Tssr58100	transcription start site region 58100	1043 bp upstream
Tssr58101	transcription start site region 58101	1066 bp upstream
Tssr58102	transcription start site region 58102	1079 bp upstream
Tssr58103	transcription start site region 58103	1112 bp upstream
Tssr58104	transcription start site region 58104	1122 bp upstream
Tssr58105	transcription start site region 58105	1150 bp upstream
Tssr58106	transcription start site region 58106	1251 bp upstream
Tssr58107	transcription start site region 58107	1643 bp upstream
Tssr62395	transcription start site region 62395	898 bp downstream