rs230869341 SNP Detail

Summary

• ID
  rs230869341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6097545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTAGCGT TCACAGGTGC
  GCGACTGTGA GGCGACCTGA CTGGTTCTCA GCCCCGCCGC CGCACCCTGG CGGTCGGCCG
  TTTCTCCGGT TCTCAGAGTG GACACTGCTG GGGGCGGGGG GGGGGGCAGG GTTCCAGACT
  GACGTACCCC GATGGGCGCG CGTCTGCGCT GACCACCCTG GCACAGCTGT CACTGGTTGT
  R
  TCGCCTTCTC AAGCTGTGCC CTCTGCACCT TGCCTCCTCC ACCCCTGGCG GGCCCAGCGA
  ACCTGCCTCT AAAGCCTATC ATCCCAGCTC CTTCAGAGGG TCAGCGGTGG CAGCCCCCCT
  CCTCCTAACT TTGCCTCAGT GACTCCCTAG AGGAGGCGCC TTGGCAGACA GCGTGGAAGA
  GCCCTAGATT TGAAACGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668115	MGP_WTSI_19_6047515	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230869341					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668115	MGP_WTSI_19_6047515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6097545 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			within coordinates
D530017H19Rik	RIKEN cDNA D530017H19 gene			86 bp upstream
Gm59262	predicted gene, 59262			1026 bp downstream
Rr370438	regulatory region 370438			823 bp downstream
Rr405817	regulatory region 405817			1491 bp downstream
Rr543277	regulatory region 543277			843 bp distal
Rr543278	regulatory region 543278			1435 bp distal
Rr543279	regulatory region 543279			504 bp distal
Rr543280	regulatory region 543280			401 bp distal
Rr543281	regulatory region 543281			97 bp distal
Rr543282	regulatory region 543282			186 bp distal
Rr543283	regulatory region 543283			123 bp distal
Rr543284	regulatory region 543284			within coordinates
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Intron
				Noncoding-Transcript-Variant
Tssr154538	transcription start site region 154538			1402 bp downstream
Tssr154539	transcription start site region 154539			870 bp downstream
Tssr154540	transcription start site region 154540			474 bp downstream
Tssr154541	transcription start site region 154541			435 bp downstream
Tssr154542	transcription start site region 154542			412 bp downstream
Tssr157817	transcription start site region 157817			484 bp upstream
Tssr157818	transcription start site region 157818			91 bp upstream