rs230682411 SNP Detail

Summary

• ID
  rs230682411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACGATAG GCTGCTCAAA
  GATGTTACTA TTCTGTGATA GGTCAAGTTA AATTTAACTG GAGACATTTT AGATGTGAAA
  GACAAAGGCT CCCCCTGGTG TCAGAGAGCT GTAAAACACG GCTTTTGTAA TTCTCACAGT
  TAAGGCAGCT CAACACTTCA AAATTTTGAA CATAGAGAAA CTACTGAAAA GTATTGCCAC
  R
  GATAAATATT GCTTTGTTTC ATAGGAATTT AGTACTAGAG ACCAGAGGAG TTAGTAACTT
  TGAAATTACT CTCTTCGTTT TCTTTTAGAA TTCTATGAAA TCCCATATCT ACTCAAGTTA
  TCCTCTCGGT TTGGAATAAG TCAACTGAGT TTCAAGTTTC AGAGCTGTGC TCTCTTGAAA
  ATATGTTTCA TAAAATGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359902718	MGP_WTSI_3_137808175	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230682411					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359902718	MGP_WTSI_3_137808175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850972 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	243 bp upstream
Cpgi13871	CpG island 13871	1022 bp distal
Mttp	microsomal triglyceride transfer protein	1793 bp upstream
Rr375797	regulatory region 375797	403 bp downstream
Rr398069	regulatory region 398069	within coordinates
Rr586084	regulatory region 586084	1834 bp distal
Rr586085	regulatory region 586085	1684 bp distal
Rr586086	regulatory region 586086	1804 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	95 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	1734 bp downstream
Tssr31945	transcription start site region 31945	1715 bp downstream
Tssr31946	transcription start site region 31946	1368 bp downstream
Tssr31947	transcription start site region 31947	1325 bp downstream
Tssr31948	transcription start site region 31948	1292 bp downstream
Tssr31949	transcription start site region 31949	1274 bp downstream
Tssr35880	transcription start site region 35880	1815 bp upstream
Tssr35881	transcription start site region 35881	1498 bp upstream
Tssr35882	transcription start site region 35882	1479 bp upstream