rs230669265 SNP Detail

Summary

• ID
  rs230669265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74512510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACTTAA AGCAGCGCGG
  GCGGGCTAAG GCGGGCGGGC GGCCCAGTCC GGTGGCGGCA GATGCGCCCA GCGGTGGCAG
  CCGCCGGCGG CGCGCAGGTG ACCGGCCTGC AGCGCAGCCT GCTCAGGGAG TGCCCTGGGA
  GAGCTGGCGG GAGCTGGAGG CCGATCCGCC CCCAGCGTGC GCGCGTCTCG GCGCCAGGAG
  Y
  CGTCCCGGGG CGTGTTGGCG AGCGCTGATA TAGATATAAG GACATTTCTC TCCATGGCGT
  CACGTGACAT AATTACCACC AGAATCAATC AAGATGAATT GCACGTCAGC GCCCGGTGGG
  GATTTTTGCT TAGTTGATCC TGGCCCAAGC CTCTTGTGCA ATCGATGGCT CAGGTTGGAG
  GCGCGGGGAG CGGCCCGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484820	MGP_WTSI_2_74520223	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230669265					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484820	MGP_WTSI_2_74520223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74512510 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11793	CpG island 11793			1419 bp distal
Cpgi11794	CpG island 11794			within coordinates
Gm28309	predicted gene 28309			1280 bp upstream
Gm74919	predicted gene, 74919			1781 bp downstream
Hoxd11	homeobox D11			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559343	regulatory region 559343			1334 bp distal
Rr559344	regulatory region 559344			within coordinates
Rr559345	regulatory region 559345			790 bp proximal
Tssr18398	transcription start site region 18398			1505 bp downstream
Tssr18399	transcription start site region 18399			159 bp downstream
Tssr18400	transcription start site region 18400			136 bp downstream
Tssr18401	transcription start site region 18401			120 bp upstream
Tssr18402	transcription start site region 18402			1293 bp upstream
Tssr18403	transcription start site region 18403			1667 bp upstream
Tssr18404	transcription start site region 18404			1727 bp upstream