rs230553000 SNP Detail

Summary

• ID
  rs230553000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53371004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACTCAC TTTCAAGAAG
  CAAAACAGAG CACCGAGAAA CTGAAGAGTT AGGGGATCGT GACACTAAAA CAATGACTAC
  CACGCTCCGA AAAGGACTTT AGTCACGTCT GCTCCACAAG CATTCAGGCT TCTGCCGTGG
  ACGCCTATAT TCCCACACTA GGACCCCGCC CCCCCCCCCC GACGCCCCAA ACTAATCATT
  Y
  GTGCAAAAGC GACTTAAGGT GGCGGTGCAC CATTGCGTCT TGTGGGCGCG ACACGCTCTA
  TCAAAGGTCC CCTGGAGCTG GTGGGGCATT TAGGGGAGCA CCCGCTGGGC GCCTGGCCGT
  ATGAGCGCTG AGGTGCTCGA GAGCCTCCCT TCGCAAGGCT CTGGCCCCCT TCGTCCGGCT
  CCTAGTGCGC CCCGGCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357982242	MGP_WTSI_3_53267505	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230553000					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357982242	MGP_WTSI_3_53267505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53371004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	within coordinates
Nhlrc3	NHL repeat containing 3	325 bp upstream
Proser1	proline and serine rich 1	212 bp upstream
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	774 bp distal
Rr576697	regulatory region 576697	within coordinates
Rr576698	regulatory region 576698	8 bp proximal
Rr576699	regulatory region 576699	94 bp proximal
Tssr29113	transcription start site region 29113	within coordinates
Tssr29114	transcription start site region 29114	83 bp upstream
Tssr29115	transcription start site region 29115	111 bp upstream
Tssr29116	transcription start site region 29116	196 bp upstream
Tssr29117	transcription start site region 29117	312 bp upstream
Tssr33269	transcription start site region 33269	351 bp upstream
Tssr33270	transcription start site region 33270	277 bp upstream