rs230540165 SNP Detail

Summary

• ID
  rs230540165
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107546525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACACCTT TAGCACACAT
  CTTTAATCCC AAACAATGAA GGTCAGGTTA GTTTGTAGAA GGAAGCAGCC GTGTTTGAAA
  GTGATGTCTA ATTGAGTGGC AGACAAAGTG GTGAACCAGA GAAAGGTATG AGAGAATAGG
  ATACGCCCAA CTCTCATGAG AAGAGAGAGG TAAGAGAAGC TGTTTAAGAG AGAGGAGTTT
  G
  AGAGAGAGAG GAAAGGAAGG AGGCAATTTT ACTGGGGAGT TTTACAGAGA CAGGCTGCAG
  AGAGAACAAG CTAGACATAG GTGAAGTCAG AATGAGCCAT AGAATGAGAA GGAGCCAGAA
  GATTAGAACA GATTGCCTAA GTTAGTATGA GACCAAGCAA AGGAATTCAG GAGAGACAGA
  GATAGAGACA GGCAGAGAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250055	CHEV_4_107361933	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230540165					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107546525 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	272 bp upstream
Gm12899	predicted gene 12899	650 bp downstream
Rr376978	regulatory region 376978	517 bp downstream
Rr597042	regulatory region 597042	639 bp distal
Tssr38260	transcription start site region 38260	835 bp downstream