rs230449899 SNP Detail

Summary

• ID
  rs230449899
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155871701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAAGGCA TGTGCCACCA CTGCCCGGCC TATATTTCTG
  TTTTTTAAAG GAACGAATAT TCTCACTACA CATCCCACTA TGAATGTTTA TGTCAGTCCA
  G
  ATCTTTGCTT CTTGTTGGCT AGCCTATGAA ACGTACTTTT AAGGAGCTGG GATTAAAGGC
  ATGCGCCACC ATGCCCGGCT CGACATTTTA TTTTTGATT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SEA/GnJ
ss363803124	MGP_WTSI_4_155161353	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SEA/GnJ
rs230449899					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363803124	MGP_WTSI_4_155161353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155871701 () rs orientation: forward

Symbol	Name	Function Class
Rr606571	regulatory region 606571	1066 bp distal
Rr606572	regulatory region 606572	1177 bp proximal
Rr606573	regulatory region 606573	1670 bp proximal
Tmem278	transmembrane protein 278	1370 bp upstream
Tssr44978	transcription start site region 44978	1364 bp upstream
Tssr44979	transcription start site region 44979	1324 bp upstream