rs230305897 SNP Detail

Summary

• ID
  rs230305897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153618092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACAAGTT TGAGGCTTCA
  GCGCACCTTT CTACAGTCTT CACATGCTAA CCCCTTTGCT AAATAATCAG ACCCATTAGC
  TCCAAATTCC ACCTTCGATT CTAAGACTCA CCCAATAAGT AGGTCAAAGC GATTGCCAAA
  ATAAATTTCC TACTTTATTC AGAGTCTCGG CTATGAAGCC CTGTCTGGTC TGGAACTCCC
  W
  GTGTAGACCA GGCCACCTGC TTCTGCCTCA CTTCTTTAAT CCAAGAGTGT TAGGATTAAA
  AGGCGTGGGC CAAGGCCGAC TTCCTTCCAT CCCAGTTAAA ATGTTTAACT ATGAAACAAC
  ATTCGTAAAT GATCATGTAA CCTTCAAAAT ACAGGCACGT ACAAGTCCCC GATGTTAAGA
  AAAAATATCA GGCGGCCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360306985	MGP_WTSI_3_153575419	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230305897					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360306985	MGP_WTSI_3_153575419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153618092 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13963	CpG island 13963			127 bp proximal
Gm24494	predicted gene, 24494			765 bp upstream
Gm43400	predicted gene 43400			640 bp upstream
Rabggtb	Rab geranylgeranyl transferase, b subunit			Intron
				Noncoding-Transcript-Variant
Rr587794	regulatory region 587794			within coordinates
Rr587795	regulatory region 587795			544 bp proximal
Rr587796	regulatory region 587796			651 bp proximal
Snord45b	small nucleolar RNA, C/D box 45B			1844 bp upstream
Snord45c	small nucleolar RNA, C/D box 45C			266 bp upstream
Tssr36248	transcription start site region 36248			247 bp upstream
Tssr36249	transcription start site region 36249			486 bp downstream
Tssr36250	transcription start site region 36250			511 bp downstream