rs230146869 SNP Detail

Summary

• ID
  rs230146869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180533159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGCTCC CCTTCTCTTA
  GCGCACAGGC AGCTCCACCC CCACACCCAG GACAACCCTT CCCCCAGCCC TTCAGGGCCG
  GGCGGCAGGA CGCAGGGAAT TGGAAATAGA GAAACCGGGT GCTCCGGACT GAGTGCATAG
  GAGTACCAGG AGGAAACGCG CAGGCACGTT TCGGCGGAGA TGCAAAAAAT TAAACTTGGT
  Y
  TGACCCATGG AAGGGGTGCT CTCCCAGACT CCCTATGTAC CATGCTCTGG CTTGCTGTAA
  ATATCTCTCA CGAATAGTAA GGGGAGGCCG AAGGGAGGTC CTTGGCCTGG GAAGGGAACT
  GGTCTTTGAG GAGTCGCTGT ACGGAGCCGG CCCCGTAGCA AGCGCGCTCC TAAATCCGAG
  GCTCTTTGGG AGTGCCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356769429	MGP_WTSI_2_180626071	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230146869					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356769429	MGP_WTSI_2_180626071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180533159 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	within coordinates
Cpgi12908	CpG island 12908	1087 bp proximal
Gm14342	predicted gene 14342	1654 bp upstream
Gm27032	predicted gene, 27032	Intron
Gm57443	predicted gene, 57443	988 bp downstream
Rr572869	regulatory region 572869	1717 bp distal
Rr572870	regulatory region 572870	1488 bp distal
Rr572871	regulatory region 572871	864 bp distal
Rr572872	regulatory region 572872	970 bp distal
Rr572873	regulatory region 572873	716 bp distal
Rr572874	regulatory region 572874	507 bp distal
Rr572875	regulatory region 572875	37 bp distal
Rr572876	regulatory region 572876	within coordinates
Rr572877	regulatory region 572877	901 bp proximal
Rr572878	regulatory region 572878	1402 bp proximal
Rr572879	regulatory region 572879	1581 bp proximal
Rr572880	regulatory region 572880	1680 bp proximal
Rr572881	regulatory region 572881	1722 bp proximal
Tssr22274	transcription start site region 22274	680 bp downstream
Tssr22275	transcription start site region 22275	668 bp downstream
Tssr22276	transcription start site region 22276	654 bp downstream
Tssr22277	transcription start site region 22277	513 bp downstream
Tssr22278	transcription start site region 22278	1755 bp upstream
Tssr28136	transcription start site region 28136	1670 bp upstream
Tssr28137	transcription start site region 28137	1651 bp upstream
Tssr28138	transcription start site region 28138	1565 bp downstream