rs229984846 SNP Detail

Summary

• ID
  rs229984846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT TCTAATCTCT CTTTTTATTT
  Y
  TCAAAAACAC TTTCTCCTTC TAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321003277	CHEV_3_142281896	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229984846					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324693 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1731 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	950 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1180 bp proximal
Rr586459	regulatory region 586459	1681 bp proximal
Tssr32216	transcription start site region 32216	747 bp downstream
Tssr32217	transcription start site region 32217	709 bp downstream
Tssr32218	transcription start site region 32218	655 bp downstream
Tssr32219	transcription start site region 32219	618 bp downstream
Tssr32220	transcription start site region 32220	604 bp downstream
Tssr32221	transcription start site region 32221	586 bp downstream
Tssr32222	transcription start site region 32222	530 bp downstream
Tssr32223	transcription start site region 32223	473 bp downstream
Tssr32224	transcription start site region 32224	419 bp downstream
Tssr32225	transcription start site region 32225	81 bp downstream
Tssr32226	transcription start site region 32226	41 bp downstream
Tssr32227	transcription start site region 32227	1664 bp upstream
Tssr32228	transcription start site region 32228	1715 bp upstream
Tssr32229	transcription start site region 32229	1754 bp upstream
Tssr32230	transcription start site region 32230	1790 bp upstream
Tssr32231	transcription start site region 32231	1807 bp upstream
Tssr35947	transcription start site region 35947	243 bp downstream