rs229959318 SNP Detail

Summary

• ID
  rs229959318
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123180080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGGATG CTTGTGGGTT
  TCTTTCACTG CAATACTGAC CGGCTTGTGA AGGACTGGAT CGCCGCTCAG TAACCTTGGC
  AAGTTAGCGA GCTTTTGTAA AAGAACAGAG AAAGAGGGTC TTGGGGGGCT GAGGCAGGAG
  GACCCAGGAG TTTGGAGCCT AGGCTATGTA ATGAAACCCT GTCATTCACT CATTTATTTA
  T
  ATAAATAAAT AAATAAATAA ATAAGAACAG AGAAAGAGGG TCTTGGGGGG CTGAGGCAGG
  AGGACCCAGG AGTTTGGAGC CTAGGCTATG TAATGAAACC CTGTCATTCA CTCATTTATA
  TAAATAAATA AACAAACAAA TAAATAAATA AATGCAAGCA AACATAGCGG TAGTTACGTA
  GTGAAACCCT GTCATTCATA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	SWR/J
ss359526197	MGP_WTSI_3_123089349	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	SWR/J
rs229959318					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359526197	MGP_WTSI_3_123089349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123180080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	363 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	441 bp upstream
Rr397990	regulatory region 397990	378 bp downstream
Rr584510	regulatory region 584510	511 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	759 bp upstream
Tssr35500	transcription start site region 35500	438 bp upstream
Tssr35501	transcription start site region 35501	421 bp upstream