rs229905287 SNP Detail

Summary

• ID
  rs229905287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGTTC TTAAATACTT
  GTTAGACTTG GATTAGTGGA TTAAAATGTG CTTTAAGCAT CACTGCTGGT CTGGGAGAAG
  CCTCAGACTC GCTGCCATAG AGATTCACCT CGTGACCCAA ACTAAAGCCG TGTGTTCAAA
  AGTGCCGTGT TTTACATAAT GCATCAAATT CTTACTCTAT TACTTAGTAG ACAGTCGGAG
  Y
  GGAAGCTATC TTGGTGAAGT CTAGACAAAA CAAGACAGCC AGCTAGTATT TTATCTGCAT
  TCATGTATTT TATAAAATGA AACATATTTC ATGTGTTGTT CAGTAGTCTG GCTTATTTAA
  TCAAAGCTTA GGAAACACCC AGTACAGTGT TTCAAGAATT GATAAAACAC ATTAATGTTA
  GGACAAGCTC ACGATAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359902707	MGP_WTSI_3_137807787	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229905287					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359902707	MGP_WTSI_3_137807787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850584 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	within coordinates
Cpgi13871	CpG island 13871	634 bp distal
Mttp	microsomal triglyceride transfer protein	1405 bp upstream
Rr375797	regulatory region 375797	15 bp downstream
Rr398069	regulatory region 398069	106 bp upstream
Rr586084	regulatory region 586084	1446 bp distal
Rr586085	regulatory region 586085	1296 bp distal
Rr586086	regulatory region 586086	1416 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	272 bp proximal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	1346 bp downstream
Tssr31945	transcription start site region 31945	1327 bp downstream
Tssr31946	transcription start site region 31946	980 bp downstream
Tssr31947	transcription start site region 31947	937 bp downstream
Tssr31948	transcription start site region 31948	904 bp downstream
Tssr31949	transcription start site region 31949	886 bp downstream
Tssr35880	transcription start site region 35880	1427 bp upstream
Tssr35881	transcription start site region 35881	1110 bp upstream
Tssr35882	transcription start site region 35882	1091 bp upstream