rs229826855 SNP Detail

Summary

• ID
  rs229826855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTTTAC TACATGTTTG
  TACTTTCCTA ATGGGTAGTT TAATTTTGTT TATTAATTAG TTTGTGTGAA TAGACTCAGA
  GCGTATACTT TTCCATGTAT CCCCGCCACC CCTTAGTTCT GTTTGTTGGT CCTTCCCAGG
  AGAGGGTTAA GGCTCCTGAA AACAAAGCTT ACAGTGTACC CAAGGAGGAA GCAAGGCACC
  Y
  CCCCCCCCCC CCTCCCCGAG ACAAAAGAGC AGACTCACAA TGACTTTGCA GCCAAGTTCT
  TCTGGCTTGT ATCCCTTTCT TCTGCAGCCA AAGGAAATGT AGATTACTTT TCTCTTCACC
  AAGAAACCAT GGAGTTACAG CAACAGTATT ATTAAGTAAA ATATGCAAGG CACTGAAAGC
  ATATAAATCA TGCACAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
ss359495984	MGP_WTSI_3_121946512	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
rs229826855					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359495984	MGP_WTSI_3_121946512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1623 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1963 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1605 bp upstream
Rr584261	regulatory region 584261	480 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	375 bp distal
Rr584264	regulatory region 584264	259 bp proximal
Rr584265	regulatory region 584265	1148 bp proximal
Rr584266	regulatory region 584266	1746 bp proximal
Rr584267	regulatory region 584267	1879 bp proximal
Tssr31477	transcription start site region 31477	465 bp downstream
Tssr31478	transcription start site region 31478	1882 bp upstream
Tssr31479	transcription start site region 31479	1969 bp upstream
Tssr31480	transcription start site region 31480	1987 bp upstream
Tssr35443	transcription start site region 35443	1625 bp downstream
Tssr35444	transcription start site region 35444	1708 bp downstream