rs229806845 SNP Detail

Summary

• ID
  rs229806845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138122992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGAAGACT CGCGGGTGGC GCCCATCCGC
  CGCGCAGTAG GTGATGCGCG GCAGCAGGTA GGCGTGCGCC GGTCTGCGGC CCCCCGAAGC
  CCCGGAGCTG CGTTCGCTCG GCTGCATGCG GATGCCGTGC GGACCCAGGG TCAGTTTCAT
  Y
  TTCGTGCCCC CTCCCGGCCC GCAGCGCGCC CAAATCCTGC CCACAGCGTC GTCGGTGCAG
  CCGTCGCCCT TGGCATGCAG GGTGACGGCG TTGCCCAGGT ACCACACGGT GTAGGTGGGG
  TCCTCCTTGT TAAGCTCCAC TTTCTGGCGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373123	CHEV_4_137951596	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229806845					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138122992 () rs orientation: forward

Symbol	Name	Function Class
AB041806	hypothetical protein, MNCb-2457	within coordinates
Fam43b	family with sequence similarity 43, member B	Coding-Synonymous
Rr602906	regulatory region 602906	473 bp distal
Rr602907	regulatory region 602907	274 bp distal
Rr602908	regulatory region 602908	247 bp distal
Rr602909	regulatory region 602909	837 bp proximal
Tssr44164	transcription start site region 44164	706 bp downstream
Tssr44165	transcription start site region 44165	757 bp downstream