rs229690830 SNP Detail

Summary

• ID
  rs229690830
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151945756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGCACGA GGGGGGCCCC
  CTGGCGGGGA CCCGCGCGGG GACACCCCCC ACGCCGGCGC TAGGAGGCGC CGCGCGGCCC
  GAGGGGGGCT GTGGAGGGGA ACGTCCGGCC CTGACGCCGC TACGGCCGCC GGCACCGGTG
  CCCGCGAGCC CCCGCGGCCC GGGAAACTTT CCGCCCCGCG GCCCCCTGAC ACCCCGACCG
  R
  CACGGCGGGG ATGCCCCGGG CCGGGTGCGG GAGGCGTCGC GGCTTCTCCT CCTCCTCGCT
  GGGCCCGGCC CCCGCCCCGC GCGCCCCCCG CCCCGGCCTG CCGCCCCCGG GGCTGGGTGC
  GGGGCGCCCC GCTCGGCCGG CCCGCGAGTC ACCTCAGGAC TCGGCCGCGC TCCGCCCCCC
  CCACCCCGCC GGCGCCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363699458	MGP_WTSI_4_151235408	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229690830					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363699458	MGP_WTSI_4_151235408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151945756 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230110K08Rik	RIKEN cDNA 9230110K08 gene			425 bp upstream
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Cpgi15375	CpG island 15375			within coordinates
Gm42357	predicted gene, 42357			within coordinates
Gm57065	predicted gene, 57065			874 bp upstream
Rr398891	regulatory region 398891			432 bp upstream
Rr605651	regulatory region 605651			within coordinates
Rr605652	regulatory region 605652			127 bp distal
Rr605653	regulatory region 605653			437 bp proximal
Rr605654	regulatory region 605654			486 bp proximal
Rr605655	regulatory region 605655			942 bp proximal
Tssr40478	transcription start site region 40478			878 bp upstream
Tssr40479	transcription start site region 40479			945 bp upstream
Tssr40480	transcription start site region 40480			1349 bp upstream
Tssr44794	transcription start site region 44794			368 bp downstream
Tssr44795	transcription start site region 44795			399 bp downstream
Tssr44796	transcription start site region 44796			463 bp downstream