rs229511357 SNP Detail

Summary

• ID
  rs229511357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141813350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT GTAGAAACCA GTCAGAACAA
  Y
  CATGAGGAAC AAGCCAGTAA GCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321392533	CHEV_4_141641954	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229511357					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141813350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15252	CpG island 15252	1229 bp distal
Rr603988	regulatory region 603988	1689 bp distal
Rr603989	regulatory region 603989	1718 bp distal
Rr603990	regulatory region 603990	320 bp distal
Rr603991	regulatory region 603991	1059 bp distal
Tmem51	transmembrane protein 51	1735 bp upstream
Tmem51os1	Tmem51 opposite strand 1	within coordinates
Tssr44419	transcription start site region 44419	1820 bp upstream
Tssr44420	transcription start site region 44420	1777 bp upstream
Tssr44421	transcription start site region 44421	1476 bp upstream
Tssr44422	transcription start site region 44422	1356 bp upstream