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rs229327518 SNP Detail
Summary
  • ID
    rs229327518
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:52666317 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GTGTACTGC CACCACGTGG AGAGCCAGAT
    AAAGAGTCTA GCATGGCCTT GCCTATCTGG GACTGAGCTT CACCTCTTTG GAAGATGGAC
    ACACACCAGG AAGAGAGGCA AGAAGACTTC AGTGTTGCCA GAGCAACTGC TAGGAGACAC
    Y
    TTGGAGTTCA GATGTCACAT CTCAACAggg atgcaggtca gtggtagaac atgtgcctag
    catgcacatg actgtgttcc cacctcagca ccagcaagaa aaatcacacg agaacgccac
    agctgaatct caTTTACACC AACCTTTAGT                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320765095 CHEV_3_52562818 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs229327518 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:52666317 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm2447 predicted gene 2447 within coordinates
Rr576581 regulatory region 576581 within coordinates
Rr576582 regulatory region 576582 126 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory