rs229327518 SNP Detail

Summary

• ID
  rs229327518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52666317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTACTGC CACCACGTGG AGAGCCAGAT
  AAAGAGTCTA GCATGGCCTT GCCTATCTGG GACTGAGCTT CACCTCTTTG GAAGATGGAC
  ACACACCAGG AAGAGAGGCA AGAAGACTTC AGTGTTGCCA GAGCAACTGC TAGGAGACAC
  Y
  TTGGAGTTCA GATGTCACAT CTCAACAggg atgcaggtca gtggtagaac atgtgcctag
  catgcacatg actgtgttcc cacctcagca ccagcaagaa aaatcacacg agaacgccac
  agctgaatct caTTTACACC AACCTTTAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765095	CHEV_3_52562818	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229327518					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52666317 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576581	regulatory region 576581	within coordinates
Rr576582	regulatory region 576582	126 bp distal