rs229170387 SNP Detail

Summary

• ID
  rs229170387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28079226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAGACG GGGGCGGGGA
  GAGACAAGTT GGAAGAGACA GAGATGGCCA GAAGCCGAGA GAAAAACAAA GAGACAGTGA
  GAGACATTCA CAAGTAGGAT CTGCTGGTTT AGGACTGTGA TTCCGGCCCC TCAGGGAGGC
  TGAGGCAGGA GACTGGTAGT TCAAGGCCTG GCTCCACTAT ACAGTGGGTT CTAGGGCAGC
  Y
  TGAGTAACTT GGTGAGACCC TTTTCTTAGG AAGTAAAAAG ATGCCAGATC ACTGATGGCC
  CAAACTTTTA ATTTCAGCAC TTGGAAGGCA GAAGCAGACG GATTTCTATG AGTTCGAGGC
  TAGCCTGGTC TACAGAGTGA GTTCCAGAAC AGCCAGGACT ACACACAGAA ACCCTGTCTT
  TTTTGTTTGT TTGTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858545	MGP_WTSI_7_29164820	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229170387					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858545	MGP_WTSI_7_29164820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28079226 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	611 bp downstream
Gm73795	predicted gene, 73795	1448 bp upstream
Rr368284	regulatory region 368284	733 bp upstream
Rr400210	regulatory region 400210	290 bp downstream
Rr644240	regulatory region 644240	1847 bp distal
Rr644241	regulatory region 644241	811 bp distal
Rr644242	regulatory region 644242	557 bp distal
Rr644243	regulatory region 644243	56 bp distal
Rr644244	regulatory region 644244	329 bp proximal
Rr644245	regulatory region 644245	442 bp proximal
Rr644246	regulatory region 644246	958 bp proximal
Rr644247	regulatory region 644247	1459 bp proximal
Tssr2163	transcription start site region 2163	401 bp upstream
Tssr2164	transcription start site region 2164	299 bp upstream
Tssr2165	transcription start site region 2165	256 bp upstream
Tssr65464	transcription start site region 65464	1748 bp downstream
Tssr65465	transcription start site region 65465	411 bp downstream
Tssr65466	transcription start site region 65466	1458 bp upstream
Tssr65467	transcription start site region 65467	1482 bp upstream
Tssr65468	transcription start site region 65468	1591 bp upstream
Tssr71497	transcription start site region 71497	1922 bp upstream
Tssr71498	transcription start site region 71498	1861 bp upstream
Tssr71499	transcription start site region 71499	1767 bp upstream
Tssr71500	transcription start site region 71500	1743 bp upstream
Tssr71501	transcription start site region 71501	1716 bp upstream
Tssr71502	transcription start site region 71502	1691 bp upstream
Tssr71503	transcription start site region 71503	1650 bp upstream
Tssr71504	transcription start site region 71504	1619 bp upstream
Tssr71505	transcription start site region 71505	1602 bp upstream
Tssr71506	transcription start site region 71506	1588 bp upstream
Tssr71507	transcription start site region 71507	1541 bp upstream
Tssr71508	transcription start site region 71508	1507 bp upstream
Tssr71509	transcription start site region 71509	1447 bp upstream
Tssr71510	transcription start site region 71510	1403 bp upstream
Tssr71511	transcription start site region 71511	1367 bp upstream
Tssr71512	transcription start site region 71512	1287 bp upstream
Tssr71513	transcription start site region 71513	700 bp upstream
Tssr71514	transcription start site region 71514	566 bp upstream
Tssr71515	transcription start site region 71515	538 bp upstream
Tssr71516	transcription start site region 71516	480 bp downstream
Tssr71517	transcription start site region 71517	1126 bp downstream
Tssr71518	transcription start site region 71518	1148 bp downstream
Tssr71519	transcription start site region 71519	1169 bp downstream
Tssr71520	transcription start site region 71520	1213 bp downstream
Tssr71521	transcription start site region 71521	1225 bp downstream
Tssr71522	transcription start site region 71522	1267 bp downstream
Tssr71523	transcription start site region 71523	1491 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR