rs229113889 SNP Detail

Summary

• ID
  rs229113889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28077922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGAGCCA AAGGTGCAAA
  ACCAGGGGGT GGGGGTACCC AGCCACAGCT TCGGCCCTCC ACCAGGCTAG TGGAGCGGCC
  AGTCAGGCGA GAGGTGACCC CAGACGGGAT GGAGTCCGAG TTTATGTTCC AAAGTCCTCC
  GAGGGATTCG GTTCCTCCGT GGTCGGATGA CAGGTCATGG CTCATCGACT GGAGGCTCTG
  R
  GAGGAACAGG GTTCGGTTAG GCCACCAGAA AAGGTAAGGT GACGTCGCCC CGCCCCTGTT
  GTAAAGCACT TCACGAGCTT GCCAGTCCGG TTTGTGGGTT CTCGGCCTGA GCCCCACCCG
  GCTCACACAA ACTCCAGGGA GAACCTGACT ACAGAGATTT GAGTGTTTCC ACATGACTGA
  AGGTAATCCA GAAGGATCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858528	MGP_WTSI_7_29163516	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229113889					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858528	MGP_WTSI_7_29163516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28077922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44710	predicted gene 44710			483 bp upstream
Gm57214	predicted gene, 57214			1915 bp downstream
Gm73785	predicted gene, 73785			1823 bp upstream
Rr380568	regulatory region 380568			1711 bp downstream
Rr400210	regulatory region 400210			713 bp upstream
Rr644239	regulatory region 644239			1333 bp distal
Rr644240	regulatory region 644240			543 bp distal
Rr644241	regulatory region 644241			within coordinates
Rr644242	regulatory region 644242			494 bp proximal
Rr644243	regulatory region 644243			748 bp proximal
Rr644244	regulatory region 644244			1633 bp proximal
Rr644245	regulatory region 644245			1746 bp proximal
Tssr2163	transcription start site region 2163			859 bp downstream
Tssr2164	transcription start site region 2164			992 bp downstream
Tssr2165	transcription start site region 2165			1035 bp downstream
Tssr65461	transcription start site region 65461			1934 bp downstream
Tssr65462	transcription start site region 65462			1759 bp downstream
Tssr65463	transcription start site region 65463			1002 bp downstream
Tssr65464	transcription start site region 65464			444 bp downstream
Tssr65465	transcription start site region 65465			855 bp upstream
Tssr71490	transcription start site region 71490			1503 bp upstream
Tssr71491	transcription start site region 71491			1406 bp upstream
Tssr71492	transcription start site region 71492			1328 bp upstream
Tssr71493	transcription start site region 71493			1278 bp upstream
Tssr71494	transcription start site region 71494			1243 bp upstream
Tssr71495	transcription start site region 71495			1213 bp upstream
Tssr71496	transcription start site region 71496			866 bp upstream
Tssr71497	transcription start site region 71497			618 bp upstream
Tssr71498	transcription start site region 71498			557 bp upstream
Tssr71499	transcription start site region 71499			463 bp upstream
Tssr71500	transcription start site region 71500			439 bp upstream
Tssr71501	transcription start site region 71501			412 bp upstream
Tssr71502	transcription start site region 71502			387 bp upstream
Tssr71503	transcription start site region 71503			346 bp upstream
Tssr71504	transcription start site region 71504			315 bp upstream
Tssr71505	transcription start site region 71505			298 bp upstream
Tssr71506	transcription start site region 71506			284 bp upstream
Tssr71507	transcription start site region 71507			237 bp upstream
Tssr71508	transcription start site region 71508			203 bp upstream
Tssr71509	transcription start site region 71509			143 bp upstream
Tssr71510	transcription start site region 71510			99 bp upstream
Tssr71511	transcription start site region 71511			63 bp upstream
Tssr71512	transcription start site region 71512			within coordinates
Tssr71513	transcription start site region 71513			599 bp downstream
Tssr71514	transcription start site region 71514			728 bp downstream
Tssr71515	transcription start site region 71515			750 bp downstream
Tssr71516	transcription start site region 71516			1784 bp downstream
Zfp36	zinc finger protein 36			Intron
				mRNA-UTR
				Splice-Site