rs229081494 SNP Detail

Summary

• ID
  rs229081494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180533814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGGGAG AGGGACCACT
  GGCCAGGCAA AGAGGAGCTG GTTCCAACAG GGAGTAGCCT CTGCTCGGAG TCTAGATCCT
  CCACTCTTGA GCCACCAGCC AGTGTCCCTC GGGCTGCAGG TGCTGGCAGG CCGTGGGTGG
  TTTCCTTGAC TTTGGGTTGG GCATAAGCAA AGGTGGGCTT AGCTGTCTGT GTAAGAGGGG
  R
  TTCTCTAGCG TCGGTTGAGA CTGGCACCTG CAAAGGGAAG GATTTGGGGT TGGGAGAGAA
  GTATCCTGAC CCTCTGAGGA CCTTCGGGCA GTGGGATGAG ATCTCCGGAG ATTACCTCCT
  TCCCAGCTGA GTGTCTTCGG GGGTTCCCAC GGGGCTGGAG AAGGTTGGAA AGGGAGGGGG
  AAGAATTTAT GCCTGGGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356769432	MGP_WTSI_2_180626726	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229081494					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356769432	MGP_WTSI_2_180626726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180533814 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	214 bp distal
Cpgi12908	CpG island 12908	432 bp proximal
Gm27032	predicted gene, 27032	Intron
Gm57443	predicted gene, 57443	333 bp downstream
Rr572871	regulatory region 572871	1519 bp distal
Rr572872	regulatory region 572872	1625 bp distal
Rr572873	regulatory region 572873	1371 bp distal
Rr572874	regulatory region 572874	1162 bp distal
Rr572875	regulatory region 572875	692 bp distal
Rr572876	regulatory region 572876	191 bp distal
Rr572877	regulatory region 572877	246 bp proximal
Rr572878	regulatory region 572878	747 bp proximal
Rr572879	regulatory region 572879	926 bp proximal
Rr572880	regulatory region 572880	1025 bp proximal
Rr572881	regulatory region 572881	1067 bp proximal
Rr572882	regulatory region 572882	1392 bp proximal
Tssr22274	transcription start site region 22274	1335 bp downstream
Tssr22275	transcription start site region 22275	1323 bp downstream
Tssr22276	transcription start site region 22276	1309 bp downstream
Tssr22277	transcription start site region 22277	1168 bp downstream
Tssr22278	transcription start site region 22278	1100 bp upstream
Tssr28138	transcription start site region 28138	910 bp downstream
Tssr28139	transcription start site region 28139	1380 bp downstream
Tssr28140	transcription start site region 28140	1387 bp downstream