rs229000183 SNP Detail

Summary

• ID
  rs229000183
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71156705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGGGGT GACAGAGGTC
  TTGAGAAGAT CCCTAAGTTT TCCCCAGAGC TCAGTTAAAC TGTCCCCCAA CTCAGAGCGC
  CCACACTCTG ACTGTCCCAG GGTGGAAAGG AGCAAGGAGG CCTACTTAAC CAAGTACCCG
  GGGTCTTCAT GAGTTCCGTA TGTTTCGGGG TCTCTCACAG AATAACATCC ACCCAACTCT
  M
  TAAGGTAGGA AGCGCGGAGA AACCCCGTGA GGAAGCGTGT TTGGCGGCAG CTGCTATAAC
  CGTGTTCCGT TGGAACTGCA GTCGCGGTCT AGGTCTGAAA GAATGTGGAG TAACAAACTC
  GAGGAAGCTC CCGGGCATGC GCACCAGCGC CCCCTTCCCC CCGCCCGCTT CTCCAAGCGA
  TTAACTTCTG TTTTGAACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923301	MGP_WTSI_17_71199050	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229000183					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923301	MGP_WTSI_17_71199050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71156705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56904	predicted gene, 56904			890 bp upstream
Rr530334	regulatory region 530334			901 bp distal
Rr530335	regulatory region 530335			70 bp proximal
Rr530336	regulatory region 530336			968 bp proximal
Rr530337	regulatory region 530337			1349 bp proximal
Rr530338	regulatory region 530338			1487 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr145684	transcription start site region 145684			241 bp downstream
Tssr145685	transcription start site region 145685			447 bp upstream
Tssr145686	transcription start site region 145686			985 bp upstream
Tssr145687	transcription start site region 145687			1626 bp upstream
Tssr149219	transcription start site region 149219			418 bp upstream
Tssr149220	transcription start site region 149220			71 bp downstream
Tssr149221	transcription start site region 149221			643 bp downstream
Tssr149222	transcription start site region 149222			1347 bp downstream
Tssr149223	transcription start site region 149223			1365 bp downstream
Tssr149224	transcription start site region 149224			1399 bp downstream
Tssr149225	transcription start site region 149225			1479 bp downstream
Tssr149226	transcription start site region 149226			1508 bp downstream
Tssr149227	transcription start site region 149227			1917 bp downstream
Tssr149228	transcription start site region 149228			2000 bp downstream