rs228865668 SNP Detail

Summary

• ID
  rs228865668
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151946881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGTGCT CCGGGAGCTG
  AAGGACGTTC CCGGGGAAGC CGCTGCTGGC GCGTGGGGGT CCCGGTGTCT TCGGAGGACA
  CGCTGGGATC TCCGGGATCC CGCAGCCTGC GGCGCTGGCG GGGGGCGGCC CTGCCGGAGG
  GATACGTAAG GCACCGAGGC GTGCCGGTTC ACAGCGTTCC CGAACCGTTT AGCCGAGAGT
  M
  GGGGCGTCGC TGCCCGACAC GGGGGAGGGG CGCACCTCCC GGCAGACCAC GCCCCTCGGC
  CAAATCCCGC CCCTTCCTGG CCTCAGCCCC GCCCCCTCGG CCGGCGCAGC GTCCCCGCGG
  CCACCCTACG CTCCCGCCTG CCTTGCGCTC CTCTGTCCCC TTTTCTAGCG GCTTAAAATA
  CTGAAACTTT ATTTTGGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363699466	MGP_WTSI_4_151236533	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228865668					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363699466	MGP_WTSI_4_151236533	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151946881 () rs orientation: forward

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	within coordinates
Camta1	calmodulin binding transcription activator 1	656 bp upstream
Cpgi15375	CpG island 15375	within coordinates
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	within coordinates
Rr398891	regulatory region 398891	392 bp downstream
Rr605651	regulatory region 605651	689 bp distal
Rr605652	regulatory region 605652	1252 bp distal
Rr605653	regulatory region 605653	184 bp distal
Rr605654	regulatory region 605654	618 bp distal
Rr605655	regulatory region 605655	within coordinates
Tssr40478	transcription start site region 40478	205 bp downstream
Tssr40479	transcription start site region 40479	169 bp downstream
Tssr40480	transcription start site region 40480	224 bp upstream
Tssr44794	transcription start site region 44794	745 bp upstream
Tssr44795	transcription start site region 44795	663 bp upstream
Tssr44796	transcription start site region 44796	651 bp upstream