rs228763114 SNP Detail

Summary

• ID
  rs228763114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95856663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTCTAT GAGTGTTTGA
  AATTTGTAGT CACTTTTGCA CTTTAGACTT TGATAACATG TTTTAAGTAG AATGTAGTTA
  GGATCTCAGG GTTAAAGCGT TTAGCTCACT GTAGACCTGC ATGTTTATTT AAATTACTAT
  TTAGGTTTAG ATATTGTATT TAAGATTGTT AGGAAAGAAG GCAGTATTAC TTTAATGATC
  Y
  CATTTGTTTA AAAACAAATG TCTAATCATA GGGTGTATTC AGGTCTGCAA TTTTGTGCTC
  TGATCATCTG ACTGAGATGG TAAACTGGGT TCTTTATGAT GTCACTGACT TCCCTATGAG
  GTCACATGGA GTTCAAGAGT TTCTTAAACT ATACTGCAAT ATTTCCAAGT GCTATGACCA
  TATCCTTTCT TAAAGCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362492473	MGP_WTSI_4_95635117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228763114					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362492473	MGP_WTSI_4_95635117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95856663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			771 bp upstream
Cpgi14458	CpG island 14458			495 bp distal
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			1163 bp downstream
Rr595499	regulatory region 595499			1468 bp distal
Rr595500	regulatory region 595500			1047 bp distal
Rr595501	regulatory region 595501			281 bp distal
Tssr37834	transcription start site region 37834			1281 bp downstream
Tssr37835	transcription start site region 37835			1106 bp downstream
Tssr37836	transcription start site region 37836			1045 bp downstream
Tssr37837	transcription start site region 37837			1023 bp downstream
Tssr37838	transcription start site region 37838			1000 bp downstream
Tssr37839	transcription start site region 37839			1493 bp upstream
Tssr37840	transcription start site region 37840			1524 bp upstream
Tssr42465	transcription start site region 42465			1409 bp upstream