rs228706511 SNP Detail

Summary

• ID
  rs228706511
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189496511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGTCT GAGCACAGGG
  GCATAGGTGT GCTACTCCCC ACATCTAGAG AGGGGGCCAA GATGGAACCC TGGACCTTCT
  CTCCTAAGAA TCTTGATCCT AGTTCCTGCC TCCAGATGCA GGAGAGGGAG AGGGAGAGGG
  AGAGGACATC TTACATACAG CTCAGGGACA GCCAGAAGAC AATCGCCTCG AGGCCTGGCT
  K
  TGAGCTCTGG GTCTAGAGGG TCTGCTGTGG CAGTGGTTCT CAGGACCTTG TGTTTGGACT
  TCCAGGGGCG GGTCTAGTAC TTGCATGCAA ATATGACAGA AACGTTTGTT CCCTATCAGC
  ACAGAAGGGG GTGGTGGCCA CCTTCCTGAT ACTCATACCT TCCTGAATGT CATACAAAGG
  GAAGCAGGCA GTGACTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320191537	CHEV_1_191588193	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228706511					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189496511 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	1936 bp downstream
Rr425842	regulatory region 425842	within coordinates